Scaffold Ga0065726_16637

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_16637
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12476
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (59.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F003889	Metagenome	463	Y
F082558	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1663712	F003889	N/A	VGPEYVAIALTACISALTGGSWIANRIMDRQKERVEQVFSYINSQKRRIDCLEDDLKQLPIEYVLKVDFLREIQEMHENFRQINTKLDKLMEKLLSK*
Ga0065726_1663718	F001190	N/A	MTSSVPTGQPTAEDYFDINKFEELLSRLESSKGRQQRQKSLEGRRDIFAGGLASMMSNF*
Ga0065726_166376	F082558	AGGAG	MKTKKLVKNALKHPELYGPADLAFFKRWLDSKKRAKAAKINKDKKKDS*