Scaffold Ga0065726_16254

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_16254
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13037
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045112	Metagenome / Metatranscriptome	153	Y
F051138	Metagenome	144	Y
F065844	Metagenome / Metatranscriptome	127	N
F089420	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1625412	F045112	AGG	MNKVSEWIDICKLHWKEIITLSIALHWIVDLLILGPVVFFLGYLFGVNFGN*
Ga0065726_1625413	F089420	GGAG	LVINYEGIILPNTFKFPECNHPIEKWCSNCDYDCETYDRIPHFKKYKELHIWTEKEFEREMKNDKNS*
Ga0065726_1625420	F051138	GGAG	MAKASKIQALKESVSDTALAFAMNVPIGFGIIAFANWVGIVSVTYEQNVQLVILQNIVFTTVAIIRKTYVRVWFENRRIKGLT*
Ga0065726_1625421	F065844	N/A	MKIQNYIEDGFSKVCDVIIHPDRKDQWYYKNVDRKFVGPDHKSWLYFIVKDDDIVKCGESGNPLLLETKGAIPRWKKGTKSRLGRYINGCTTDTYIRTELYEDVIQGKVSIWAKKCKVTSSKIVVMGQEGTVERSIHKDLEMVYLHHFITEYGQLPPLNKGIK*