Scaffold Ga0065726_16155

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_16155
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13176
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062906	Metagenome	130	N
F085576	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1615511	F085576	GGAGG	MKQWYIRLKSGNFENGYFDVGNNFDLILETAKSEFAKDCMAQGFVPLTLEVVLVEQNEI*
Ga0065726_1615513	F062906	N/A	MGDIILRLLYLMDNPHGGQSVKVGTSGLMKYPSRIGNYQQGNGPDYLVTWPICYIGEESVVNRLEERIKTVLEHDRLESRLGEWYDHHTVATIAPKIDDIIQGNHFKVKRVEDKFLPISYEVGWKIQKKMMEHYQKPSILCDFLLG*