Scaffold Ga0065726_15458

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_15458
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14373
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003841	Metagenome	466	Y
F007686	Metagenome	346	N
F072273	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1545810	F003841	GGAGG	VTDYAAVLTANYPAASWSLNANDYETLEWHGPGDKPTQAELDAAWPTVQHGKQLAAVENARRADYEYTSDPLFFEWQRGDGTEQAWLDAVAAVKAAHPYPPAP*
Ga0065726_1545816	F072273	GGAGG	MATIQTGRTLDVSIDGTDYSAQVAEVSLVPNETTEQYVTLTDTVAVKQPTTFQLQLRAFQDWGEAGSFCDAMWTAAAAGAAISFSLGVAGAGTFSGDIIPSFPTAGGPADGALEVEFTFEVTGDVTKA*
Ga0065726_154589	F007686	AGGAG	VNIANPSKAMIALVALVCVTILLATDSVDESAGTGLIGMIAGYAVGNGIAARRGDEVTPIIGRKVDK*