Basic Information | |
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Taxon OID | 3300004369 Open in IMG/M |
Scaffold ID | Ga0065726_15458 Open in IMG/M |
Source Dataset Name | Saline microbial communities from the South Caspian sea - cas-15 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Beijing Genomics Institute (BGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14373 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (80.95%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Caspian Sea | |||||||
Coordinates | Lat. (o) | 41.916215 | Long. (o) | 50.672019 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003841 | Metagenome | 466 | Y |
F007686 | Metagenome | 346 | N |
F072273 | Metagenome | 121 | N |
Protein ID | Family | RBS | Sequence |
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Ga0065726_1545810 | F003841 | GGAGG | VTDYAAVLTANYPAASWSLNANDYETLEWHGPGDKPTQAELDAAWPTVQHGKQLAAVENARRADYEYTSDPLFFEWQRGDGTEQAWLDAVAAVKAAHPYPPAP* |
Ga0065726_1545816 | F072273 | GGAGG | MATIQTGRTLDVSIDGTDYSAQVAEVSLVPNETTEQYVTLTDTVAVKQPTTFQLQLRAFQDWGEAGSFCDAMWTAAAAGAAISFSLGVAGAGTFSGDIIPSFPTAGGPADGALEVEFTFEVTGDVTKA* |
Ga0065726_154589 | F007686 | AGGAG | VNIANPSKAMIALVALVCVTILLATDSVDESAGTGLIGMIAGYAVGNGIAARRGDEVTPIIGRKVDK* |
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