Scaffold Ga0065726_14681

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_14681
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16115
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011489	Metagenome	290	N
F013089	Metagenome	274	N
F023580	Metagenome	209	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_146811	F011489	AGG	MRLKHKEEWNEFLTKNYLKLVRIAKRWTDDPSDLVHHVYLRCIDKRFPNGENETATGYFVKAMYFEATRGKFKEIYKVYDQEPDETTNENDWTKAVQREQMQLILDRLGWFDRTVFSLYLQGWNMADVSRRSGIGESTLYRSLHLTRKTLKDVLRNRTKED*
Ga0065726_146816	F023580	N/A	MNNIKLFLLRNYTSIDKAAKSLNVNPKTVSNWCGGSPRNMLKHLPEISQTCGAPFAEIIEEVLICEREGVE*
Ga0065726_146818	F013089	N/A	MGQSKIKSITPNGTFEGRNGLMYKFDIELENGQGGEVSAMTEDRWSIGDEVEFEITPSKWGDKMKLSKAGYNRSGGYKDDPEKTKRITASWAIGLAIQEENDPEKIIEAAEHLINLRNTLISKL*