Scaffold Ga0065726_14491

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_14491
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16632
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (17.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023218	Metagenome / Metatranscriptome	211	Y
F026279	Metagenome / Metatranscriptome	198	Y
F072235	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_144911	F026279	N/A	MSEKLFVRKCERYTLWEASKPIEIDVEKLRKCDPPYEGDSAQEVLDYLQENVHYNYEWAETNAEIYGEDEAYELTFDDQPDMEVYSDTREKYAQDWLDVGVPNPEYRKMGGFEVKATNVEDA*
Ga0065726_1449113	F023218	N/A	MSRFPSYKRPIEYVNGKPYIIHAIYPIVNVKDPKLVKDWLGVDTTFKVNRDGTYWFCEEIEEINWEDV*
Ga0065726_1449116	F072235	N/A	MTNEQFTEELLIKSHSLGIKDQVWELASKYKEEDRTLDLHGSIHKAFYKLTK*