Basic Information | |
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Taxon OID | 3300004369 Open in IMG/M |
Scaffold ID | Ga0065726_14179 Open in IMG/M |
Source Dataset Name | Saline microbial communities from the South Caspian sea - cas-15 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Beijing Genomics Institute (BGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 17464 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (40.91%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Caspian Sea | |||||||
Coordinates | Lat. (o) | 41.916215 | Long. (o) | 50.672019 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013421 | Metagenome | 271 | N |
F018943 | Metagenome / Metatranscriptome | 232 | Y |
F020191 | Metagenome / Metatranscriptome | 225 | N |
F074760 | Metagenome / Metatranscriptome | 119 | N |
Protein ID | Family | RBS | Sequence |
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Ga0065726_1417912 | F018943 | N/A | MKILITGHTSPMGKDVYNYYSKNNECLGVSRQSGYDLTTQEDQDRVVSEALTHDIFLNIAHVGSTQSTLLLKLKQKWSEESSLKKVITIGTLATRIPQKLLEQAGVNKQYLKDKHHIDAVSNALANEKPFGAQLQFSLVRVLNYGEKTGSREGEPTCTVDDMTRSIDYIINEPMYIGAMEIRRY* |
Ga0065726_1417914 | F074760 | N/A | MLTKTNIKTSSKEIYDLVKHLPEGKNTLNEPTGKFFYDPWQLKSEWQGTALDDLLKQIPDHGEVRVIVLKPGESYFAHADIDDRYHLTLDAEQSYLIDIENEKMYPTIPDDTVYLMNTGVLHTASNYGYKNRYQLVIRKRLDSTNELYESVLVMMSVKDPVYNLRYLFDSSFSRLLNRLAKEECISNFDRINETTIKFSLEKENITELLKMQQMCGFKIEILYG* |
Ga0065726_1417915 | F020191 | N/A | MSNYETIKSIYQSSIYKNILHEIDGVIFPFSDQWKNIGISVSGGADSALMSVLLCSIISQLQIDTKVHIITNVRCWKTRPWQQKNSLDVYNWLTSAFPSIEFKRHENFIAPDLEWGSQGPNIIDEYGKLKSGNQIELRAHAEYVAHKEKLNAWYCGVTKNPDKEFDHRLVDRDVIIDTLSDATLDRLIKPHMGGFACHPFTYVQKDWIVAQYKKLGIMDLFNLTRSCEGDKETYPEIFGDLDYKTYKVGSPVPVCGKCFWCNERKWGEENSDRS* |
Ga0065726_141799 | F013421 | N/A | MDLKKFKYYYNNVPGKGLCRNNLIYTSLINEDATEFCMWFHNDSEYHKGHNEVVDPALMQMKWNREKDFLLWLDIDHKQLIPRTTRFDYDEQKIYFEIQGVDFWEQSHGKTYQDVLPNWEEQMLYILETHKQLGIYKYSLHPSSYFVIDGELKNINYFFAYRKDEEPITVKEHMSHISKDRQKELLPKMKTMGIKANKIYPFDQLQILCLESFRNVYPDSFIDKAISIYK* |
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