Scaffold Ga0065726

Basic Information
Taxon OID	3300004369 Open in IMG/M
Scaffold ID	Ga0065726_13661 Open in IMG/M
Source Dataset Name	Saline microbial communities from the South Caspian sea - cas-15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004369 Open in IMG/M

Scaffold ID

Ga0065726_13661 Open in IMG/M

Source Dataset Name

Saline microbial communities from the South Caspian sea - cas-15

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19088
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (15.38%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

19088

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (15.38%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location
Location Name	Caspian Sea
Coordinates	Lat. (^o)	41.916215	Long. (^o)	50.672019	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Caspian Sea

Coordinates

Lat. (^o)

41.916215

Long. (^o)

50.672019

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023555	Metagenome / Metatranscriptome	209	Y
F025977	Metagenome / Metatranscriptome	199	Y
F048942	Metagenome / Metatranscriptome	147	Y
F069688	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1366114	F023555	N/A	MSLRKDKEREFYMQHMDAFKAIGIADPFFTIKTAFFKKGKYGRQCQFFEWELKKEEDIYIEFYDNVYDDNGNSKNIIPMYDDRQLFKLKYNPYFEEEYDMIEAYDSKGNPDKKFLVPVNEMSVVLKSGQEISYSLYEKRKEEAELEVPALQKSVSLFPDFEEEFAPKKESEDTSDLKSVLLKLSHEISNLSSVLESTIHKIK*
Ga0065726_1366116	F025977	N/A	MQEIFKLLIEENLTPNSFYVLYCIKDKIVPNKFVNGVLECKKLTSQGWITEDLELTNKSIIFTTKIDGYFNKSKKKTSKDLMGDNFMQNIDAYVKLFPNKKLSSGKYARVPAKSLELSFRWFFETYDYDWQTIFSATQKYISEYETKNYDYMRTCRYFLRKQNTDKSWDSDLATYCEYLNESPDIDENPFEELIV*
Ga0065726_1366118	F048942	N/A	MIKVKELKDDAMIDVKVNKSYYLMAKAASFTILKSMGLENKENPDEYFKTIMNDKYENLDDTQRAFYTIILLLAEIEKQATENNLYVEKEVLEPGDEGYVEPTIKENPTEGSN*
Ga0065726_136617	F069688	GAG	MEKINNIFTVETVALDGSYIVVTGEYQMNMVPGVLPFETGDILTEDKYHGHQIYVDFATKDENGKDGLILDTKSMHPSIKKSLDRIIPGLHLFKIED*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0065726_13661

Overview

Ecosystem & Geography

Associated Families

Sequences