Scaffold Ga0065726_13653

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_13653
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19116
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (57.58%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004789	Metagenome / Metatranscriptome	423	Y
F007028	Metagenome / Metatranscriptome	359	Y
F012571	Metagenome	279	Y
F026542	Metagenome / Metatranscriptome	197	Y
F078617	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1365315	F012571	GGAG	MPIQDEDDVIGVCTECKSDQPMSYMYKSAFAQAGLSVPCKYCGGVVAIVYRENRDASLDSSDDKRGI*
Ga0065726_1365317	F004789	GGAG	VSLPGTHQNPSHKQCWTYCTSCSRCADKGRYTACNGCSGRFDPKGVIDVNNDDFCDCKNGNLRWTPKSGGKSFIVKFKSNPFKGQVKYEKKSKDERDWDSYVKDMREKMNDPNWNPITVVEED*
Ga0065726_1365325	F026542	N/A	MNDQNLEKLQQLLSDFLGPQIQEVINSYIDATKGSKYFIEIPDEDTVDLGIENMASLVAKTSNVYGRAARFAGMARANYKIMEGKYKKKYKSSRVGKNEAEREAAAMEAAEDEYSALITCEAVLSLAESMESSARIASESSRKLMDKVQSMQIAAFRETKGHYQESDFTTY*
Ga0065726_1365329	F007028	AGGA	MPKINKTPLESSSFDSPIDNVVSVIPGELSLTTSPVFICGVNRKINIGNFENIDVYAAVTIPLPNVSYENQAALRSAIEEAAVYGFSIVSKETGDRYSLIKESQQGNKQ*
Ga0065726_136535	F078617	N/A	MQTKIFLSGAIEEVGIFAHGWRNKAVKLLADRGFKAVNPMDYALEEQDCEPKEIVSKNMFLQKSCDLILVEYTIPNRAYIGTDFEMTWAYMNNQPVVTFADKSYVNRVYLNFLSTKVASSLEDAVEYISNTYPSTK*