Scaffold Ga0065726_12154

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_12154
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27045
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (79.07%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006545	Metagenome / Metatranscriptome	370	Y
F012773	Metagenome / Metatranscriptome	277	Y
F032263	Metagenome / Metatranscriptome	180	Y
F054845	Metagenome	139	Y
F072119	Metagenome	121	Y
F090344	Metagenome	108	N
F093836	Metagenome	106	N
F101123	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1215411	F101123	AGG	MNLAAIDALWNKMLVTYGSEWTRKFDGMPLDEVKGAWADDLRGFTVEQIQYGLSMLGERPPNLIQFKDLCKKAPQYFDSLQLTYRPTPSEEKLAKFRRAYAD*
Ga0065726_1215413	F090344	GAGG	VRCDKHIGGKMTPENEVEQVITRSMSAAEIMDLTGHNKWTLFPILHRLMRENKITKKNLRYAPTGYSDKLISNKQDEFFCADPFRLSGLQDAGDLQHKLRAMQTKTSSTGVMQGLTAADGRKVRWA*
Ga0065726_1215419	F093836	N/A	VVQEQLRNWAWWLAGYVGPPVQDKAASAEGNYVSDEIWDGHDPKYEPDQLAGERMEEIVRNLPTFSRMVLKAAYVQYPYHLEHSIAQRLKISTDRYKSELKKAHELVAKSLKLD*
Ga0065726_1215420	F012773	GGA	MKEKGVTVMIGLLGPGKKMGKEADSLLEDDMSECPLATQDEIVNKGNKQKAILTANYGPKEDERMCGNCEYGNKLKGCGLSKNEVFCEIFEFKCAKVNVCDAWDGGEEEED*
Ga0065726_1215422	F032263	AGG	MTVNKEVYEKPRPKSLGKPKALSPNQKRAAKAFAKKSGTAYPSLVANMAGARAKK*
Ga0065726_1215424	F006545	GGA	MKVRDAAKLFEKYDQRTTRKMAEHNRAGGSVRKPVRSTKDASSSDQYDRGKFAYRKASQAITASHPLQNDKGEPTPAALQFKRWGFPVPKNQDDLRKLKALGARLKEKYKPRES*
Ga0065726_121545	F054845	N/A	MTTTGPRPQEDFMEDYDAAGQAHQEDLLRQQEIEEALGLFSPVYVLPSQQLTAEIQYFKSMEVI*
Ga0065726_121546	F072119	GAGG	MAYKLNAKRDVDTDEPGVFILNLPGGWKFNHDPMSVCHTYAYDSMKELRQDIKHSVEPCDCDECKRMIANHQ*