NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065726_12154

Scaffold Ga0065726_12154


Overview

Basic Information
Taxon OID3300004369 Open in IMG/M
Scaffold IDGa0065726_12154 Open in IMG/M
Source Dataset NameSaline microbial communities from the South Caspian sea - cas-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27045
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (79.07%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location
Location NameCaspian Sea
CoordinatesLat. (o)41.916215Long. (o)50.672019Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006545Metagenome / Metatranscriptome370Y
F012773Metagenome / Metatranscriptome277Y
F032263Metagenome / Metatranscriptome180Y
F054845Metagenome139Y
F072119Metagenome121Y
F090344Metagenome108N
F093836Metagenome106N
F101123Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0065726_1215411F101123AGGMNLAAIDALWNKMLVTYGSEWTRKFDGMPLDEVKGAWADDLRGFTVEQIQYGLSMLGERPPNLIQFKDLCKKAPQYFDSLQLTYRPTPSEEKLAKFRRAYAD*
Ga0065726_1215413F090344GAGGVRCDKHIGGKMTPENEVEQVITRSMSAAEIMDLTGHNKWTLFPILHRLMRENKITKKNLRYAPTGYSDKLISNKQDEFFCADPFRLSGLQDAGDLQHKLRAMQTKTSSTGVMQGLTAADGRKVRWA*
Ga0065726_1215419F093836N/AVVQEQLRNWAWWLAGYVGPPVQDKAASAEGNYVSDEIWDGHDPKYEPDQLAGERMEEIVRNLPTFSRMVLKAAYVQYPYHLEHSIAQRLKISTDRYKSELKKAHELVAKSLKLD*
Ga0065726_1215420F012773GGAMKEKGVTVMIGLLGPGKKMGKEADSLLEDDMSECPLATQDEIVNKGNKQKAILTANYGPKEDERMCGNCEYGNKLKGCGLSKNEVFCEIFEFKCAKVNVCDAWDGGEEEED*
Ga0065726_1215422F032263AGGMTVNKEVYEKPRPKSLGKPKALSPNQKRAAKAFAKKSGTAYPSLVANMAGARAKK*
Ga0065726_1215424F006545GGAMKVRDAAKLFEKYDQRTTRKMAEHNRAGGSVRKPVRSTKDASSSDQYDRGKFAYRKASQAITASHPLQNDKGEPTPAALQFKRWGFPVPKNQDDLRKLKALGARLKEKYKPRES*
Ga0065726_121545F054845N/AMTTTGPRPQEDFMEDYDAAGQAHQEDLLRQQEIEEALGLFSPVYVLPSQQLTAEIQYFKSMEVI*
Ga0065726_121546F072119GAGGMAYKLNAKRDVDTDEPGVFILNLPGGWKFNHDPMSVCHTYAYDSMKELRQDIKHSVEPCDCDECKRMIANHQ*

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