NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065726_10704

Scaffold Ga0065726_10704


Overview

Basic Information
Taxon OID3300004369 Open in IMG/M
Scaffold IDGa0065726_10704 Open in IMG/M
Source Dataset NameSaline microbial communities from the South Caspian sea - cas-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49335
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (68.42%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location
Location NameCaspian Sea
CoordinatesLat. (o)41.916215Long. (o)50.672019Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004789Metagenome / Metatranscriptome423Y
F007028Metagenome / Metatranscriptome359Y
F007312Metagenome / Metatranscriptome353Y
F012571Metagenome279Y

Sequences

Protein IDFamilyRBSSequence
Ga0065726_1070419F004789AGGAGMAATGSYQNPSEKQCWTYCFSCGRCEDKGRYSKCNGCSGRYDPKGTIDAHPEDFCDCRNGTLRWKTQTGKVIITKFRSNPYAGSVTYEKKSEDERDWESYLRDMREKMNDPNWNPITIIDEDNPIKGTGR*
Ga0065726_1070422F012571AGGAMSNIQNPDDVIGVCSECGSDQPMSYMENNPFAHQGASVPCKYCGGVVIIVYREQRDSSINGSNKERGL*
Ga0065726_1070443F007312AGGAGMATFYVGPRPVLKGRNTKEMVNPYKGTAGTYSFYPLFGKGLLDGAPDNHYVPGTGNHPGNRFLSQVFNGTDLYVHPLSGTFPDGTATYDGARYQPLQFKGLESAKAFVSGYGHAIDRANDYALYSNFKFDGVTSAEVFATGFGHAPRTEAQGAPSTFGLFKPDLHSGVASATVFTTGYGQANTAGEYGRQKVNEYFGVPSAKAL*
Ga0065726_107047F007028AGGAGMPKINKTALEQSTDSPIDQAVTLNAAEISFSSSPIFICGVNRKINIGNFENIDVYAGITLPLNGVSLDDKEALQHAVQEAAAYAFAVVSKETSDRYTLIKESQQNK*
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Institute for Fundamental Biomedical Research
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