Scaffold Ga0065726_10702

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065726_10702

Scaffold Ga0065726_10702

Overview

Basic Information
Taxon OID	3300004369 Open in IMG/M
Scaffold ID	Ga0065726_10702 Open in IMG/M
Source Dataset Name	Saline microbial communities from the South Caspian sea - cas-15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	49365
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (72.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location
Location Name	Caspian Sea
Coordinates	Lat. (^o)	41.916215	Long. (^o)	50.672019	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016406	Metagenome / Metatranscriptome	247	Y
F041814	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1070221	F041814	GAGG	MAISSLNNTLEEELRVMLIDKNNECASLRAHIELLEKAVAEEQEQKYRLLVENADLKKELSNK*
Ga0065726_107027	F016406	GAG	MRLNEFYNPEFDEYQKADSEQRRKPKMTLEQLNKLRKVRAIKRAEDIEHKKFVAIMYQQPSADGGAGGLI*

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