Scaffold Ga0065726_10400

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_10400
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65385
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (74.24%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004405	Metagenome / Metatranscriptome	439	Y
F010302	Metagenome / Metatranscriptome	305	N
F017131	Metagenome	242	Y
F022813	Metagenome	212	N
F024955	Metagenome	203	Y
F030063	Metagenome	186	Y
F047645	Metagenome / Metatranscriptome	149	Y
F056609	Metagenome / Metatranscriptome	137	Y
F086583	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1040015	F056609	N/A	MNNYSTYEGKFPCKTCKKEVKTMRVYMDAGMASWMCSEKHLSEVMLFKKGYKKVKKND*
Ga0065726_1040025	F086583	GGCGG	MADLGIKKVIIKKSSLPAIDFDSLGYIFQYRIISEDKNRVSHWSPINIVLGDTITAVSGALQISQTIITAVWGDEENRPKYDIFVGFDGLVPVYHGTSPIHTYSFINTGTTNVRVVIQIEASIKQLSQSLQIYDSGSQALV*
Ga0065726_1040034	F022813	N/A	MSILTDTGFPPTFLNRYILSELAFHELIADSDLVNPSPMVPAQFPTNIEDLYNDSIQIRQTESPILIVYDRLMRFRPTPFYAHKREQLIYFIYSTDVGKLIDSVRVISNALDREDASAQDVNSYNVSNPILNSSGEESIPYNIYFHNTRVYQADESRDVAELASARTLFVNKIIVEYDYHIKTETNSRYT*
Ga0065726_1040036	F004405	GGAG	MNSCEVTDFMYPMKADIYFPILTQGDYGQPKKDWVYDRTVTCNATSVGGLGTEDIKPETFLQYENKLIARTQNDPRLSSNNSNNATTNILVTNVRDASDNIIYKETAGPRSGRGTIYEIATVEPFAGPFGSIEYYKMLWRRTENQTVGD*
Ga0065726_1040056	F030063	AGG	MPTSFNTDGKPGFIYNAADDTWYELSGKTDTSGTFEWAGLQTYLSAVTMLESLVAKKGINNYLNPSARDASITSPTAGSICLVRQDGSGNTIHQLQFYNGSSWIPFIPAQAGNAGKVLQTDGIITSWQDASGLPELFLLMGG*
Ga0065726_1040057	F024955	GAGG	MAVENIGNLVPTKIPALVDDANIQDALRAYHYGSYDFDTAENDTANLLNPSIAYTINDLQEQIDDQVALELAARDISSAQNSAPVAADFTAFSNTIPDGYIWVDKDAPAPVGYLSATSIYTATEPTTGLANGVLWIKKGTSPIEVYVYNGDTSSFDQVI*
Ga0065726_1040058	F010302	AGCAG	MVDVLLNTEDVVVLGPPDSVDVLVDIGPQGTRGSKFIVGSGEPNALTASGVLFGTTLILNDMYINTAPGAGYGYMYQYISQAGTNTWVQVLKINPAIYSAVQTLSFSSGSASTTIPISNIVTVSGSPLTASNFNVQFKIEGANPIASSMEIPALAGAGSNLVINFDAVEYSGGSWSALTGSKTVHLFISIV*
Ga0065726_1040059	F017131	AGGAGG	MAFPGNFNFNYYRGDTAEFVVRPKTANGSAFDLTGFSANFFIATARGENQTQYEGQAVVDASADTITCTILPGVGRDLAAGTYVYDVQIDASASEIFTVLTGTITVTNDITGADES*
Ga0065726_1040065	F047645	GGAG	MQCKHVYEYVGSEICPSCGQPTHEPNLDLDHRLFVQYYKSDKPREYVCPVDGGTIRGWWSI*