Scaffold Ga0065726_10326

Overview

Basic Information

• Taxon OID: 3300004369
• Scaffold ID: Ga0065726_10326
• Source Dataset Name: Saline microbial communities from the South Caspian sea - cas-15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72080
• Total Scaffold Genes: 112
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (34.82%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location

• Location Name: Caspian Sea
• Coordinates
  • Lat. (^o): 41.916215
  • Long. (^o): 50.672019

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F008401	Metagenome	334	Y
F035747	Metagenome	171	Y
F038652	Metagenome	165	Y
F045546	Metagenome	152	N
F054011	Metagenome	140	Y
F060451	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1032620	F001215	N/A	VASTSTNKSPLMVDRPFLRGARLTSATSIVDSSNPSFGDLVQLVRVGDIPSEDGALVEDLFVVSNEGYPNNSGVRSAAFGVYVYAPNQAAPSTSASLMIGKFEVGLSGDTEGLIQRVELPAMVAPTPQTGDTNLVRPIEIGKAEGLYLEKGYILCVGYLGNGPASVSGGLSPSGITIAAQGGFY*
Ga0065726_1032621	F045546	AGGTGG	VAKKRGADNFSPNGPRPLGPFKPISKLVGSDKKSQFLRPLPFNRKFRPVTSTKDYSNSVVSEYNYASLWSRWRRGYELSMYAQNAYGGLVYSSFKYYASGTAGVGGFIPGLFFAYPSQRSDMRMHMVGIRPRDTFNFLDFGISVQSVTQYDSTTFAVVLSQRFGAPISFFTGEILSNRFNADGTDKLVGYNNYTVTAVGFNGVITTPSINPDFNTLFLSVTDDKSWFVDNSGDLVIPATGPPLAGEFLTTEVRIQCSCQDFLSRESFNFYNLSLKQKYPYTNILNIDPGFFDAGSTASERISPSMDYPGYARTFGFVYLNKVYTIPPKADLLANYSDPSLFYFQPRWCKHIYAAYWDMQRRFDLFSVTNFRLYQPNDEPMDEYYREKFEVELEKQTTFLKREEDLVWWLRYSPSLGGLPKHLMYSDKYNMIAKTLNFGQLDDITELQDTNFELFTIDQFNPLSPGSFPREIYDGGSYANGVRISSSSNVLDGGQYSNGVPLPPSGPPTFINGGTY*
Ga0065726_1032624	F008401	N/A	VFIQHLYFMEPAKLLTIAQTAELLNCSAGFVRKRIALTESNQLGGWPKATFVNLQPNGAKSLYRINQESLQNYLKGDEEETKLEETPAVCGY*
Ga0065726_1032626	F060451	GAG	MDVSSHQGNLNIGLTLEDEFTLTRIRNAATELSGKARDQYLWARIYRFVCRERAYKAVADELGVIIDTNINIFDQEQAE*
Ga0065726_1032691	F054011	N/A	MSYSPYFSEFHKDQLLAVVNHHMQHDLRKILMRECPAAYNSLCQRVVVTSQVEDTQDKVISR*
Ga0065726_1032694	F035747	N/A	MAIYNTNYNAERDFMRRMIRAYEQDLLQLLNETPNHPGGDWAKNDLTTLEYLRTKTFSDTTQTITF*
Ga0065726_1032695	F038652	N/A	MTYTIDTEAARELEEYAVNFSSAHYNSVGKTLSKFWLNNTFDLDRAIGYIERYLCTPAAKDYQREYGSLTTSWNSLFAKPERLVAAEAIAKSFVNEFKLDNFWLV*