Scaffold Ga0066599_100008141

Overview

Basic Information

• Taxon OID: 3300004282
• Scaffold ID: Ga0066599_100008141
• Source Dataset Name: Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2906
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater → Freshwater Pond Sediment Microbial Communities From The University Of Edinburgh, Under Environmental Carbon Perturbations

Source Dataset Sampling Location

• Location Name: Crawford Collection of the Royal Observatory Edinburgh
• Coordinates
  • Lat. (^o): 55.9232
  • Long. (^o): -3.1878

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031078	Metagenome / Metatranscriptome	183	Y
F059951	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066599_1000081414	F031078	AGGAG	MEAVIIGALGLMALPAIRAAIKSYRSKKALADVAVDAIEAAVDAIDNKK*
Ga0066599_1000081415	F059951	N/A	MNLQDYAAIAVAIVTVLGGVAALLRFVILHYLAELKPNSGSSMRDEIKRLETRVDKIYELLVSKGE*