Scaffold Ga0066599_100000166

Overview

Basic Information

• Taxon OID: 3300004282
• Scaffold ID: Ga0066599_100000166
• Source Dataset Name: Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9569
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.04%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater → Freshwater Pond Sediment Microbial Communities From The University Of Edinburgh, Under Environmental Carbon Perturbations

Source Dataset Sampling Location

• Location Name: Crawford Collection of the Royal Observatory Edinburgh
• Coordinates
  • Lat. (^o): 55.9232
  • Long. (^o): -3.1878

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F029443	Metagenome / Metatranscriptome	188	Y
F036704	Metagenome	169	Y
F047062	Metagenome	150	Y
F049637	Metagenome / Metatranscriptome	146	N
F069672	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066599_10000016611	F036704	N/A	MWIEIEVMLNGSTMDWDALGLEVKHEFVRRMVRVKDVSYVQELVHDIQLIFFYDNTSCLIRGTYADIRDELIHLTEDEDFD*
Ga0066599_10000016612	F001775	N/A	MMDRKDLYTSALFFLGGLILGFLLLPRPETEEVYKFTSVTETDTIYLTSKDTIYVPKKEIKTEVLRDTILIDYKPQIKAFETSFPFEYGSTKVSGEVLGEVLKMTAINDYTIPVVTNTITNTETKTIIQKPKGIYLGAGVNSLLEPSAKVSYLDNKYLFSYQIEPMQRVHQISVSKKLF*
Ga0066599_10000016617	F069672	N/A	MRLIFILFLFFSVECHAQYYVMAAPNVAFNTKLQDTKNLFGGTIEVGKYFGDTAIGINSGWWTFDKKDFYQELMATFPIYERFSVSAAIGYFYHHKDITMEYDFNYTIPMDQGYSFVLSYGAQSAFGETFGAYSIGINKDFKIK*
Ga0066599_10000016621	F049637	N/A	MNLLKSDELGVPSTFLAMFANVTAMAGLQFVNVVFTSVISILSIIYLGYKLKHEIKKNQGNGEG*
Ga0066599_10000016622	F029443	N/A	MTLSNLIEKLKAIQEDHPMIRTFGEGDIYDYTDNGGEIVYPVFWTVVRPSQYSNMTMRYRLVLLFADLLTEDKSNRLQVQSDQLLVALDVLAKLKLDNDYNFNTQPQASVEFFQERFDDFTAGVSIEIEITSPMPLNLCQVPTT*
Ga0066599_1000001669	F047062	N/A	MSYKTENYFDQEIDFTYEGQDYIWCGDYTIETYGEDESEYAPAYGEVDVKIDHTSSLASYEDGIEITPTPSLLAAVEFQIERNL*