Scaffold Ga0066606

Basic Information
Taxon OID	3300004280 Open in IMG/M
Scaffold ID	Ga0066606_10030795 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_100m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004280 Open in IMG/M

Scaffold ID

Ga0066606_10030795 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_100m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2247
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2247

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)	Depth (m)	100
Location on Map

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Source Dataset Sampling Location

Location Name

British Columbia, Canada

Coordinates

Lat. (^o)

48.6

Long. (^o)

-123.5

Alt. (m)

Depth (m)

100

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056157	Metagenome / Metatranscriptome	138	N
F056357	Metagenome / Metatranscriptome	137	Y
F106115	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066606_100307951	F106115	N/A	MAVATAATIQAHLIGATYPEGTLSKNNIFDYEQYTTRRRYPSCEVITTQPESTVETKKSTDTTIAFEINYYDKNLGLRTDDVSTQREVENVIRARMETMVLQDYKVVFESKSWSRQSVQRDGSHPAYLISTLKITVRQVNVTVMPVDGVLTFNVAGSTVDNPPGADYIYTNVFDVDLQSGYRDIEEGYTGSNIPKHFAGHIQGRFVCNIMVKNADLGTTGDKLNKMPLLLTTGEKPQIKFVYTNKT
Ga0066606_100307952	F056157	N/A	MAKKKLASSDYWAQHIIRAQQGGKDYIFALVRRRYSDDDIEPVGPGEYLGLSEKKNYPKMTDGDPDSETFGKRIDNPKAEATGIKIIYTDPFTPENLKKYQSMVGINSFGETAYLYKFKQMTIQADKVNEFWTITQDDAYNKYILKEQVITIEENKSNARRGISKKAG*
Ga0066606_100307953	F056357	N/A	DLKEYKELLTVERYDQEIQKLNEMALEEIAVEQAKLTPNEKTIQSIEKKLDRGIATATDSVYMNLLKELNTCKQGMDKQTAPFQTAREFEISEFNLWQVNNVKVNGHLGDLILAVEECRGQQKLLKIVGEGYSSMPTGEDDYQFSLQDKYTPDIQAVNYDSLLATNNSVNTSLICDSNQHSQQYKKQFGCMMLYDGLSAEEIKRQNEIRFGTDGKIQYQSQVLDDYMDFMSNYGDRQATVEDKKVQELIAEPIANDMIESNNFYQNKLKNGD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066606_10030795

Overview

Ecosystem & Geography

Associated Families

Sequences