Scaffold Ga0066605_10051246

Overview

Basic Information

• Taxon OID: 3300004279
• Scaffold ID: Ga0066605_10051246
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1864
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062240	Metagenome	131	Y
F076876	Metagenome	117	N
F081863	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066605_100512461	F081863	N/A	MMLNLFAMTITPDQFKEIMRLFDAGDFESRKEAVSILYEGFSRHYLIVIKRDFMFNKYDDAMAEEVLQDVFLSLLSKQTKPSSAFAIGAWLKSYVFNVTRDRMKKSGFEVLP
Ga0066605_100512463	F062240	AGGAGG	MTKDEKDKIMKQLLADAGYDYEPKPRKDGDEIWTPCGQDVPKEAKPMSKETKDKLLKAKRSKRLKSFLD*
Ga0066605_100512464	F076876	AGGAG	MKKTNRFYAALITMTFGFSLISNVSAEDKNFLWESDGSLTIVDGAKDSGYIIEDGEVKTYVIPSDTEKTFIHDGSSGELIVCDPSIGCY*