Scaffold Ga0066605_10023709

Overview

Basic Information

• Taxon OID: 3300004279
• Scaffold ID: Ga0066605_10023709
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3014
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027807	Metagenome / Metatranscriptome	193	Y
F048234	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066605_100237092	F027807	AGAAGG	MSIKFVEPKPIKAELIQELDGLVSQLHNLSIRKPMPFHVQEAAMEARMADFLELSEQDFIRGWTDCEEGIEHREGKSEAYNAGYADCYQYENQGGQ*
Ga0066605_100237093	F048234	GGAG	MQIAIQISKQVDDWDKWVDELEQIDNTASADDYDAEAKVVTLLVDSKSIDDHYHPVGGRYPVEFEGRKEFVEEIGICVHSCKWQDHNIINAEEVCAKLEGLDYVN*