Basic Information | |
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Taxon OID | 3300004279 Open in IMG/M |
Scaffold ID | Ga0066605_10005575 Open in IMG/M |
Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7276 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (80.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | 10 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003976 | Metagenome / Metatranscriptome | 459 | Y |
F010571 | Metagenome | 302 | Y |
F015812 | Metagenome / Metatranscriptome | 252 | Y |
F059441 | Metagenome | 134 | N |
F061778 | Metagenome | 131 | N |
F095310 | Metagenome / Metatranscriptome | 105 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0066605_1000557511 | F015812 | AGGAG | MNETLYKRLEDICAREYVINKLTKDKFRTFVDFLYDDIRTWDNPTEVSDNDVMYRIEEHLSHMVARILTNTHTGTAHD* |
Ga0066605_1000557512 | F061778 | AGGAGG | MNKYNVAVHYEEGFSVEVTAPNVEEARKLAKELVDAYCGVSESFDNVGQDEGKYLKAYHRDCWIVGER* |
Ga0066605_1000557513 | F003976 | AGGAGG | MSRTYNDYYFEKLDILATLEKLDMSVRFLDKWVDEPEGLENARYILEKNANRKFNWFDTNMVRELLEEEDDE* |
Ga0066605_1000557514 | F059441 | GGAGG | MKIWSSTITYTVFDMGADCETEEDYIEYVKETFEQDHNIYLRDDEITDIQKEESYNE* |
Ga0066605_1000557515 | F010571 | N/A | MGGIERMSNTIQENYIQNLYEELYEKYYEEVGKTTDDVEYIEKEAERLAEIDLDNFEMEG |
Ga0066605_100055758 | F095310 | AGGAG | MKMFLIKFLTALAVFLTMYVSIIIVNDDTVENSDEIITLNRKVQSLEETLQAVKEQQNYLQIMQRGLRDALDNRTVEVDRLVEQAVDDKFNEQSATGGFGVLTGEILPVEEVVEEAIEEVVE* |
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