NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066605_10005575

Scaffold Ga0066605_10005575


Overview

Basic Information
Taxon OID3300004279 Open in IMG/M
Scaffold IDGa0066605_10005575 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7276
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003976Metagenome / Metatranscriptome459Y
F010571Metagenome302Y
F015812Metagenome / Metatranscriptome252Y
F059441Metagenome134N
F061778Metagenome131N
F095310Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0066605_1000557511F015812AGGAGMNETLYKRLEDICAREYVINKLTKDKFRTFVDFLYDDIRTWDNPTEVSDNDVMYRIEEHLSHMVARILTNTHTGTAHD*
Ga0066605_1000557512F061778AGGAGGMNKYNVAVHYEEGFSVEVTAPNVEEARKLAKELVDAYCGVSESFDNVGQDEGKYLKAYHRDCWIVGER*
Ga0066605_1000557513F003976AGGAGGMSRTYNDYYFEKLDILATLEKLDMSVRFLDKWVDEPEGLENARYILEKNANRKFNWFDTNMVRELLEEEDDE*
Ga0066605_1000557514F059441GGAGGMKIWSSTITYTVFDMGADCETEEDYIEYVKETFEQDHNIYLRDDEITDIQKEESYNE*
Ga0066605_1000557515F010571N/AMGGIERMSNTIQENYIQNLYEELYEKYYEEVGKTTDDVEYIEKEAERLAEIDLDNFEMEG
Ga0066605_100055758F095310AGGAGMKMFLIKFLTALAVFLTMYVSIIIVNDDTVENSDEIITLNRKVQSLEETLQAVKEQQNYLQIMQRGLRDALDNRTVEVDRLVEQAVDDKFNEQSATGGFGVLTGEILPVEEVVEEAIEEVVE*
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Institute for Fundamental Biomedical Research
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