Scaffold Ga0066605_10003729

Overview

Basic Information

• Taxon OID: 3300004279
• Scaffold ID: Ga0066605_10003729
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9267
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F006845	Metagenome / Metatranscriptome	363	Y
F013088	Metagenome / Metatranscriptome	274	Y
F038657	Metagenome / Metatranscriptome	165	N
F063662	Metagenome	129	N
F093807	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066605_1000372911	F013088	GGAG	MDNSTKKALWIGEELHKDIKIFAIQNNLTIEQATQMLIKLGMVTYEAEKNSDTV*
Ga0066605_1000372912	F093807	N/A	MKQRKTVTQFSDIVELHRLKLNQEKDEWYIHVNNGAGYTEVKQGNTLTTTYHADGRKEVVIDAN*
Ga0066605_1000372914	F006845	GAG	MKSYKRQMDLHSYLLQEDFEEFCRESYGKIQIACEFLGIINDEDYENFKERCYAQLEIDYINSIENLTIH*
Ga0066605_1000372915	F038657	AGGAG	MDVLGGMSNTENKQQIYLGFKTRDQKFFANGETEVPIEYLQLDTDTFKSGWGRYTKAEGFQYKWDSKFGVVNPKPADEWRRAFSVWVMPSGAEHAYLWQSFSFAESSAFNNICGLFWADKENNVGKLPVVEYKGSKHIQVGAGNSSELSFGFVKWGDRGFNVPEWYIDPDAPADDDDGFVSPNEGLADKVAEMVAKTELSDSDIPF*
Ga0066605_1000372918	F002221	AGG	MKTYLDKNLEGKLKELRTYELETYEKWGNRKRIFKMVGVQFEIKFCRGEQMLRESLESDVVRKKIQMVDMMHRAFVALNIKCEESGYIMIQPRARCFNFDKKTALICDTDEQKPLLVKIHKDEPDIMIFSIEELLRCIPKDFVEAKQILSK
Ga0066605_100037298	F063662	AGGAG	MEVIFNIVGGGEICLPKREIRGYYKDFLTGETKVQIGESEHEVRESLTEIKYLMETRDDRRT*