NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066605_10000420

Scaffold Ga0066605_10000420


Overview

Basic Information
Taxon OID3300004279 Open in IMG/M
Scaffold IDGa0066605_10000420 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28395
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (6.12%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000751Metagenome / Metatranscriptome907Y
F002629Metagenome / Metatranscriptome542Y
F006815Metagenome / Metatranscriptome364Y
F018209Metagenome / Metatranscriptome236Y
F018560Metagenome / Metatranscriptome234Y
F023952Metagenome / Metatranscriptome208N

Sequences

Protein IDFamilyRBSSequence
Ga0066605_1000042017F002629N/AMEVNETAWEKLKKQIEYHTTQDSEITDVQINYQIKPGKKNYLKLNITIDKWDTITE*
Ga0066605_1000042025F006815N/AMKNNYSKETAKTKFDEYTYRIEALCNRIEELKAQIEVSQIFKQETKWN*
Ga0066605_1000042026F018209N/AMKTQKHDLKQEIKHLESQLRFAVINLDAFTQLSINKRLDVAKSTLINIQ*
Ga0066605_1000042029F018560N/AMENTKCIEVRKDYYLLIIDDKSLGEFEKSQLRHIIEVIDNAI*
Ga0066605_1000042034F000751N/AMNIYKTNFPTEQDGKDYLLSIGVLVETDGEIVFAKDTAAVVYIGKVVKIPATYDADGNIITPAVFYPGYAIDVMNANPNLDFGSFMVYPVEAAHSFYGYPRNAEVPK*
Ga0066605_1000042036F023952N/AMANEMYYKSWWGRGVCDNTVGWGIIYKIYAGCSAVPALLLTLQARATYYENVTCTNETLTELENIQ*
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