Scaffold Ga0066610_10105457

Overview

Basic Information

• Taxon OID: 3300004276
• Scaffold ID: Ga0066610_10105457
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 965
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 165

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018478	Metagenome	235	Y
F099320	Metagenome	103	N
F100003	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066610_101054571	F018478	GAG	MIKEFEEMDWSKEYTYKEKKIYISYETKKYILCSFYESGKGTFKLDKTEFHG*
Ga0066610_101054572	F100003	N/A	MKIKRKHYKALQYASLIQRWKYLPSNFIFQVVQNSKVDETMLNRNRIEQNDKRI*
Ga0066610_101054575	F099320	N/A	MEENVYSYCLEVHEDGNLYMVTEYMNGYITIWAANATIETEGEVYFINLYE*