Scaffold Ga0066610_10061223

Overview

Basic Information

• Taxon OID: 3300004276
• Scaffold ID: Ga0066610_10061223
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1340
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 165

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030081	Metagenome / Metatranscriptome	186	N
F051538	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066610_100612231	F030081	GAG	MTTNNLWFWMKNRKEEPVREGIPVYAKQYEEGYVSKVEIVHQTEISCSRGHPTHYMKIRPVYDTYGYKEPGRIVCEKCGTLYRLMEPTLEE*
Ga0066610_100612233	F051538	N/A	MTASANPYAEAIKIHSAVYSYIEKVSPTLYMLNACNSDLYVPTLMYSVEQTYNLVPSNVKSYQIVNTIWKTQEHTIMDPRLEASLIMVKQGLRNPETVTEVQAACDALDSYVKTRFYWEHSTQG*