Scaffold Ga0066608_1031728

Overview

Basic Information

• Taxon OID: 3300004273
• Scaffold ID: Ga0066608_1031728
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_135m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1535
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032623	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066608_10317281	F032623	N/A	FSQCHKRKKLDENNYRGLVAGWSRILTMTENIWIWVLIYSMPLTAVIWFLGMWATHEDYKKEHNIKGWSDKEMNAKQIILTSIVSTIVGTTGWLGGVYYGSANMFETIYDNVGNELDLLGKKLDSESTKKIESQIEQLKQRVLNKVPSQQDIIDMSAQVDEINERIVVLASETQGLISDLKYSVREDLNKTTTDLTNTVESSITAQSDSVKKEIGKLYDKVDVLYKELTEVTTIIDKAKNTFFGKSVFKEKK*