Scaffold Ga0066396_10000702

Overview

Basic Information

• Taxon OID: 3300004267
• Scaffold ID: Ga0066396_10000702
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2651
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000284	Metagenome / Metatranscriptome	1378	Y
F001481	Metagenome / Metatranscriptome	687	Y
F003919	Metagenome / Metatranscriptome	462	Y
F027001	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066396_100007021	F027001	N/A	YSHCVVIHFAAHPPSKFWPKGVTAFSRAEWAGSLALAERSARRWRKEQYVEAIEILEARQV*
Ga0066396_1000070210	F000284	GAGG	MLLRTSVAVFAAAISLGLWSGASNTVLAHDIYSNLRDRDGHFCCNGQDCRPVQVTVLPNGSYYLPTTNEIIPADRATPSPDDRFHHCTYSATAYDFEPDGGPMSGGGGIGGEVTR
Ga0066396_100007026	F003919	AGG	MNFVPPDTCLQDYQKRRSAFLNELIASTPNVSLRAKEFRRWIDENSAYSDNDEA*
Ga0066396_100007027	F001481	N/A	MTKLKRSVDPSSLDADWPPHQEIAIADLVAEARAADWDFTNWCLASGYDASDPDARRMFECLLAYARFEGGAGLH*