Scaffold Ga0007787_10546942

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10546942
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 579
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → unclassified Chlorobiota → Chlorobiota bacteirum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011583	Metagenome	289	Y
F014137	Metagenome / Metatranscriptome	265	Y
F031867	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_105469421	F011583	N/A	KGNYFNYWYKRFIKDGLKACKTIIGLGIAVGLWYSVNLPIGILFFGWVLVEALIDRN*
Ga0007787_105469422	F014137	N/A	MLIIKNIHKLIGKEYNEVFNIIGVKEYEFHYEFTLGYDASIKPAVETILLHRKQTDNGMYVMEYNSKTLWLNKNEFDTIDKIIICMQTI*
Ga0007787_105469423	F031867	N/A	MKVIYMQRTIELIVKSQTQLSNDSLLKQKPTRVETHKEQKY