Scaffold Ga0007787_10275944

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10275944
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 829
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027747	Metagenome / Metatranscriptome	193	N
F050913	Metagenome / Metatranscriptome	144	N
F067732	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_102759441	F067732	AGGA	MKIETAIGILNKEREFLGLGFLELLQDIQKYGKMTYSQKTMEAFERFMVDGR
Ga0007787_102759442	F027747	GGA	VNVSTILVVLLLTFMVLNMITYKFYVGKDVYEFTAESKLNAMEMCNRQVIDKLDLHPMAWFDAGQNAFSCQSGNFFD*
Ga0007787_102759444	F050913	N/A	SQKIRVMFDGIGVYTTVAGVSSVFATYTHSQAANDALLRLSYMRYMAQKDGALVPTGVGMTSYNTSQVGTQVQVDLI*