Scaffold Ga0007787_10127953

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10127953
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1206
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015970	Metagenome / Metatranscriptome	250	Y
F042184	Metagenome	158	Y
F061577	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_101279532	F061577	N/A	MPRPKTEMTKSGKTIAVRATLTEWNEFKRLGGAKWLRPFLAKSIEKHQQTKETK*
Ga0007787_101279533	F042184	AGG	MELDIDFCDLEIDIKAWVEWEYDPEYSPNEGVYDKFIWVAYLQIGNNRIDITDELSAKECKQIEKQIEESIDDSI*
Ga0007787_101279534	F015970	AGGAG	MTAFNKAMWEAYQQLNDDDIIEAISGSVAIPLAIKSGDWEYAFQFIRDRIENKMTRRAEFALYNIIKTSLIDDDDELRTLRTLWLKNEYRGDKDET*