Scaffold Ga0007787_10111729

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10111729
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1285
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002935	Metagenome	519	Y
F007691	Metagenome / Metatranscriptome	346	Y
F038241	Metagenome / Metatranscriptome	166	Y
F061860	Metagenome / Metatranscriptome	131	Y
F090399	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_101117291	F002935	AGAAGG	MSNRITGYVGQIIDGKKLAKIANDIYRLQYSNDFSECTVDNLLLIELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKSCLTDKTEDISSYIRTFGSRLDSNCSLWQSKMSVRNDMLVV*
Ga0007787_101117292	F007691	N/A	MNTINELINEIYEDNYSHLEFEENMGGLDCDCNIHMVLNTIATYAGIEVG*
Ga0007787_101117293	F038241	GAGG	MLGYTKEDLDQMANSIHDAKLFYILKSDVIKVDEDPIVDGLLKAHDFLQGLWAEGYFDNE
Ga0007787_101117294	F090399	AGAAGG	MSNAFIEYLKIHEISLMQDLDKIDYVNEHHFYRVKEAEIYNTRHLLSVAEDMIES*
Ga0007787_101117295	F061860	AGGA	MNITELHPNVQKQVDLGYSGTDILHGELKNMMLECENILVPLLENSNQVGSDEDYEDTVARLYNEGYMDALTAVYSLTYDLSFAIAERAKNA*