Scaffold Ga0007787_10082816

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10082816
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1479
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054031	Metagenome / Metatranscriptome	140	Y
F071229	Metagenome / Metatranscriptome	122	Y
F093858	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_100828163	F071229	AGGAGG	MSDTTAIISACLILMSLYTTFHLGIECERERARQARRRRFEEGQEK*
Ga0007787_100828164	F054031	GGAGG	MSTPNWKEIEANRDRAEALPESAWTTETPETEAAVAASGPAYGIPLRECSRRLERQRNALHDLLARRSSK*
Ga0007787_100828165	F093858	N/A	MIDLHDPQTICRSIGFFLDFLTLTVPVISMAIFAWRLAR*