Scaffold Ga0007787_10073738

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10073738
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1561
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024060	Metagenome	207	Y
F031871	Metagenome / Metatranscriptome	181	Y
F042297	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_100737381	F042297	AGGAG	MGFEKVVLDKVATVLKSDTQAEFFCGTLSVICNERDANKILIKLNRDYDNKVQMSPDGSYGYLFDFVA*
Ga0007787_100737382	F024060	AGGA	MTKQFVQVSAHKDSNNFAHCSNLSLMANQNLTAKQALRYLQVMADEYELNGYKIEWICEDFDAVYEEMYGELFA*
Ga0007787_100737384	F031871	AGGA	MKQTHTMYIYKTDRRTKTGERLVSTTVWQNRDAAEMKREVRELQYELWPVSKGYRIEFHPTMKTVRNLMTGADVQIDRDTPWSCN