Scaffold Ga0007787_10072043

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10072043
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1578
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003541	Metagenome / Metatranscriptome	480	Y
F005742	Metagenome / Metatranscriptome	391	Y
F007116	Metagenome / Metatranscriptome	357	Y
F023791	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_100720431	F023791	N/A	FDNQQEVGQGSERVIRTTFTMVVNAYLLPERYNEKPTIKKAYSPKRIMFSVETDLSGAMFTQPSLYNEYAQVIDFIGVRGNQMATFVNSTTVKLTNVKKPVLPQELVGVFDVENWFRVYINGDFISPSLYTYSYNGYTKEIIFSFDSLGFSLDIDDEIAVTGKFQEL*
Ga0007787_100720432	F005742	N/A	MNVTILKNVMKQINEPNEFELFFHVDEPYYWVYKVDGVRVKDLYKTMVDLRKPTARFDVFINGLFISENDYIFDQLGNDFYIKFIKNRFPELDRFGNQYILNEEDEVKIEGDVEKFI*
Ga0007787_100720433	F007116	N/A	MARKKPNINVQTTQLLRDRQAFKDFVLKINTDTFTYSYSPNIISVENDIYFTLTLLNKKFVFDIFQVDDVRDYVDVYLFGVKQPADRYDVQQVDTNIIVTFTADITRLPNEVNASDFEIKGKIAEIV*
Ga0007787_100720434	F003541	AGCAG	MARLIPRKQIEEQQDISASLSIRENLYVGNDIINSGSLFVSQSFFLGNDTGSRSEITGSVFLTGSLTIDGILKTAAPNTILSVTSSNALESVDTQRYAGILAKDFGANLPTLYV