Basic Information | |
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Taxon OID | 3300004240 Open in IMG/M |
Scaffold ID | Ga0007787_10072043 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1578 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003541 | Metagenome / Metatranscriptome | 480 | Y |
F005742 | Metagenome / Metatranscriptome | 391 | Y |
F007116 | Metagenome / Metatranscriptome | 357 | Y |
F023791 | Metagenome / Metatranscriptome | 208 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0007787_100720431 | F023791 | N/A | FDNQQEVGQGSERVIRTTFTMVVNAYLLPERYNEKPTIKKAYSPKRIMFSVETDLSGAMFTQPSLYNEYAQVIDFIGVRGNQMATFVNSTTVKLTNVKKPVLPQELVGVFDVENWFRVYINGDFISPSLYTYSYNGYTKEIIFSFDSLGFSLDIDDEIAVTGKFQEL* |
Ga0007787_100720432 | F005742 | N/A | MNVTILKNVMKQINEPNEFELFFHVDEPYYWVYKVDGVRVKDLYKTMVDLRKPTARFDVFINGLFISENDYIFDQLGNDFYIKFIKNRFPELDRFGNQYILNEEDEVKIEGDVEKFI* |
Ga0007787_100720433 | F007116 | N/A | MARKKPNINVQTTQLLRDRQAFKDFVLKINTDTFTYSYSPNIISVENDIYFTLTLLNKKFVFDIFQVDDVRDYVDVYLFGVKQPADRYDVQQVDTNIIVTFTADITRLPNEVNASDFEIKGKIAEIV* |
Ga0007787_100720434 | F003541 | AGCAG | MARLIPRKQIEEQQDISASLSIRENLYVGNDIINSGSLFVSQSFFLGNDTGSRSEITGSVFLTGSLTIDGILKTAAPNTILSVTSSNALESVDTQRYAGILAKDFGANLPTLYV |
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