Scaffold Ga0007787_10055252

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10055252
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1783
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003714	Metagenome / Metatranscriptome	472	Y
F010765	Metagenome / Metatranscriptome	299	Y
F042864	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_100552521	F003714	N/A	MPNAHHPYVETLTFAGRVIPLKRPMAEYAARRLQAILPQIAALNAAGKSQADAAAALGTTVCTLRTWLDLTNTQWVNLNRRGPYKRHA*
Ga0007787_100552522	F042864	N/A	MKTPTKPKAELVSDKAMTELLKRKVVDFRAAANLKDKDGCVKGLGSYALYGIDHARGQLVVLASEPTAGDFNKYVTAKAKADVCALFDQVVEYRDAGSHSRPKVTILCWHLA*
Ga0007787_100552524	F010765	N/A	VSAAIPQPPSPDEIPVSLRDITFGVLIGSASWLIRYLCSTEKHSLGFIARRTATAGLTSLLVGLGTKGYFSSEGLAFAAAGCAGYASPELVDLLLARIKAMRGKTPSKG*