Scaffold Ga0007787_10049741

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10049741
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1872
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007688	Metagenome / Metatranscriptome	346	Y
F078427	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_100497413	F078427	GGAG	LDSSVLLVQAASGLEKLMSGSRGGVLKDSTVAQISAFVYYEAHVVARLTSNKGFQNKFKTVIFDQISKDFGEYIDAQARIKPKQLHHVYEWDKVGNSQARLFKLNKVDSGELSFKVGYEFKPSKSFARSNENSKRRHVFVEKAAVMEAGMPLTISPRAAERLVFEVNGYTVFMPKGASVLVAKPGGAGVKNSFQAAHKVFFTGNLVNEAIKKSGFQRLFNSSMTKALRVPSDIKKVKYSFSPNTIMTQADNALTESFGGRI*
Ga0007787_100497414	F007688	GGAGG	MVDYKLDAMLELRKFLWTKLLANGIFDAEEYYSDNLEETINAILPVQQAAELNQFFSGKKHIIYDKIGAAYEDLWAIC