Scaffold Ga0007787_10042416

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10042416
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2010
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F010397	Metagenome / Metatranscriptome	304	Y
F023346	Metagenome / Metatranscriptome	210	Y
F103125	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_100424162	F023346	N/A	MNNTISKNIILTYAKALRTIQKDQIDPYVELIEKELIKVYPELKDREDNALNWAYDILNATSNTEVVETLTRLDKIIEDERKEKWTCGYCGKNTYNDDVEYLFGTNHIGCVLEEDIKNREHSDPDYILDNRLRKISDIERKLNDYESELNKLHAELVRLRSDYHHEPTN*
Ga0007787_100424164	F010397	AGGAG	MNVNEFERTKPIVTMQKINELIKLIDEERVKTEILYRDRVRSLDDIGILLKDMKNSFKKGE*
Ga0007787_100424165	F001840	N/A	MKDPDSIFLICDCYEHGLLVEKFKDEEEVSLSLFERGLKGRTLCWSERLRWCWQILRYGRPWSDFVILNTENQKQLKEFLNECKRV*
Ga0007787_100424166	F103125	N/A	DGNPNAKSLIEKLPTRKEIKVWWQQIFPITDTVRLYAYDTDTNDKYDYWIECDVTFVGGKVTEAKLLEFTATDNSERKKQHQKDVEYWNNRRAFEKTLFYKLFGKCYNRSISFVCRRIHTIATWVTCKIWKVEKFLKI*