Scaffold Ga0007787_10030925

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10030925
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2310
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053899	Metagenome	140	Y
F055551	Metagenome	138	Y
F091391	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_100309251	F091391	N/A	MAEIYTFTPKQKPKIENSIELDRLRAKLLELHEVRDTLNKEIRYTKDAITLLEKGEK*
Ga0007787_100309254	F053899	AGGAGG	MSRQTEFDAVMDRIKNLSEYEVQVTVPEDFQFEGPVPFDMSISGDIAWVKVLATSIEEATLKANEYFECKYK*
Ga0007787_100309255	F055551	AGAAG	MNTLNANTNKPWMAPEYDVPVLENEEMWSQRVIDDAAQYLWLEIDREEDKK*