Scaffold Ga0007787

Basic Information
Taxon OID	3300004240 Open in IMG/M
Scaffold ID	Ga0007787_10026509 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004240 Open in IMG/M

Scaffold ID

Ga0007787_10026509 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2473
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2473

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F011761	Metagenome / Metatranscriptome	287	Y
F057213	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_100265091	F057213	AGGA	MLENEFDGSVTAPEGEQVTNDLGDSKVNPGMIRKSTTQSLLNAFSQASGQNFESVEAALAYVARTANQPRGGNAQPMDVDTTDNSRMGRDVVDDNTDLRDQFMKLQRNLANKDRALRMKELDTEILRNMGDRFDNDLQDYALQKIKSNIQFKRDGSYSIINSKGQERYGMDGNPLTINGLIEEVARGNPKLLKQSQSQGGSGLRMGQSQFAGAPMDQIPDYSKDPAAFNAWAAKNGLGKSVGLKATTVGVSVGTMSRKLI*
Ga0007787_100265092	F011761	GAGG	MAYVLNGAQNEADGFTTAIANFALRAMHESTGLVDYTTVVAPTQGNEYLVPQFAPITYQDYNPNGAPNTAGFGANGATEQTPALGQGNITATPAVAATAFDIFYAWTTSFQLAATLGAELGESYGEKVDQRVCDAFLSFKATPSNSLYSPTPLDGFARPTQLGAMELIEAGGNTANATTGFTATTVLELIRNVKQNYKVARLPGAPVIILDSNGSATAANVSAAGGSGSTMTRLLAELTGGAVNQPGAYGGTSLSALGNELLASGRLDNVYGCKVGFTTFLPSATRTVAGNANANVIVGAYFHETALVTVLKEGLQIKMGEKPGGLQMWLTGLAYMGAGVADPRRGGAINIVQD*
Ga0007787_100265093	F002260	AGGA	MSVPYQRISNATVQDIIFYDPAAERRASQMQVNWDDYFKVGSQEILYKLEFGWWPKYCDTTFGASYYQNLPNGQLISSFNPSLLIKNDQTLIRLDTFMAVKIFYESIVSDTSNVNDVDNVNFSHALRRFESEWEKALQLMNFYDLYQDAPNGPTTKLEENWTADVDYFNNDRRYF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0007787_10026509

Overview

Ecosystem & Geography

Associated Families

Sequences