Scaffold Ga0007787_10010385

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10010385
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3698
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056536	Metagenome	137	N
F095396	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_100103852	F056536	N/A	MICYYPYEGATERITWHGGESTMLHYQVQVDDYKGDPDWIDRYSQTLMGGIPCGTKELLAAMSDYYQDISQLHLDTMAGTIF*
Ga0007787_100103858	F095396	N/A	MNPKNRAERIIALEAIENEAKKLAESGADSLDVQGFVSGARKELVNQRPDPESYFEAAVVAKKAKG*