Scaffold Ga0007787_10008743

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10008743
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3975
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002287	Metagenome / Metatranscriptome	574	Y
F004838	Metagenome / Metatranscriptome	421	Y
F022872	Metagenome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_100087433	F022872	N/A	MSWQIPTQIEQDIISGKAQYRTFQTGVGGQSILPVPSNAYAVIFGYDFSPAGGGLRKFSLQGASLGQFLSDDIIRYFETQQISFYTGTDFYPFIHHIDSQMTLSPYLTNLTPVSSEVAQYQMLESIDSKPISRQVYITSDKDITISVGLILDSDVASANAIPQTNRTPALLTYGGSGQAVATQTDFGPAATPIQFMQPSPKDYQDFAFGLLPNGASGQAFATPDTARGLYDPSLFLTNLGAGFRDAAACNYFLCLHYALYTQSVPESRG*
Ga0007787_100087434	F000710	N/A	MATNMDISYRQGIRSKGFAITAATGITQQTLSLSGLAKSFEGILISSAFTATPQTVINPKQLRITLTINNDVVIDDDVALHYASPATGGFSGGFPFFIPIPRRLTGQDTIQLRLVNTAASQNVDVVVWYRNEL*
Ga0007787_100087435	F002287	N/A	MSQVGKLGYVDSKLGAPISGQQTTRILFNTIEAPGTTSSLSFFKNFQGLTNGQTNLTQNKLDSMESMVIKTIWLAQYSTTGVLSPVGGQNQQTLSIIVGNQTVVKNLPIQFNQGINGQAFDRLHENAGGVTQAIDNSVLAQNTQPCEIRLLTDIVIPPQVAFEVRLESNAGIYGTGAVVCALSGYGKIFSAGSSF*
Ga0007787_100087436	F004838	N/A	MALSAQDKILYVANKLGLSSLGQMQGSTGAVYDVDTDISGQIFSSASRHQNPSVTNITENQFEVNEALLVETCAFYVRNAAGNTLNFQSVYGSNAVIVFDLVIGNKRVMKDTPVFAAGSPYTFANASNQTKVVAGINLETYVPRHQVFMEGAGILIPPQVQWYVDYRIFDVVTGATIAATDDTAVGCYLFGTRVLLNFNTTI*