Scaffold Ga0007787_10007439

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10007439
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4246
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009263	Metagenome	320	Y
F011213	Metagenome / Metatranscriptome	293	Y
F029109	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_100074391	F009263	AGG	MTQWAPVWKVTIQGVEYTDVVLANLSISSGRSNIYTQAQAGYCTINLINLNLAAITAQINDAVSIQVKDTAGAFVPIFGGSVVDVAVTVSQTGSVAITQEVTITALGALSRLQKALTLGVLSKDFDGDQIYTILEDLLVNNWGEVPAALTWATYTPATQTWANAENTGLGEIDRPGNYELAARGSDQIITWDLVADLATSGLGYIYENAQGQISYADSTHRSTYLATNGYTELDANQALGRGIKIQTKAGDIRNDVSIVWKSGTQTATSAASIALYGK
Ga0007787_100074393	F029109	GGAG	MAFKATKGQGTFRIEVEPYALKNLISTLNLLDKETQGRVRDAAQPLSKRLAGQIMMFGHGSPTPQTKLVLQSIVTPRDRLIRVDIGGPKKVGRAYGGRPSKSGKGAKVGRTQAPAGALLWGSEYGSRPGIDRAGRKYTNRFKVPYNREGYWLNKSVDFYTPVVAQEYISIVQGIINDLGLK*
Ga0007787_100074397	F011213	N/A	ATLYANTDAVETAVTIVSVEIFQSVVAPGGQIEGVDFQPSPFRMGRSLQNRVIGLLGNYIDVSTMAM*