Scaffold Ga0007787_10005564

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10005564
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4791
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048791	Metagenome / Metatranscriptome	147	Y
F070878	Metagenome / Metatranscriptome	122	Y
F074495	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_100055642	F048791	AGGAG	MAINFSNANLTLAQMRTFVGELSDLDIGFDENDDISTDLVNGFVKEGFQKVVALSNRWPYYQTTYGFAVTTDIRSYTTFNQVQPTVIGSNPKGITDISQIISVINSDTNFQGNSLVYLDQARCESIWVGTQDQQGPPAYFSVWADQLNLWPKPDNNYSFTLRGFRNPSLTWMQNEGDAIDISPQLQLPLINYVMARIFQFQEDTEMANEYMRSFERAIAIIQGNLTAPSSNRQLIMSGGLQLTPYDWWWSDTPNMRVLPGSPYPLGVAL*
Ga0007787_100055643	F074495	AGGAG	MNKQTQGVGQGLSGTQPYGTVEGARHVGSIMADYHGAGVEIAPPSGVAYGGVHYKNGLCQAMNKKEEQCKAPKAKGTDYCVGHLNRLKKMGEEQDAALDPKE*
Ga0007787_100055644	F070878	AGGAG	MATNNKFIVERTNVLAADVTVGTTYAALDSGDFGWYGKAGETYSFSAEVVYDADGATEGAAFSLTASAAPTTVQFVSVYPLTATTETKTQCVAIDTPDHGTSSVDGLNTAQVFGVVTPSADGFIGISGVAENASKITAKGGLSTLSWKRIFVGDNE*