Scaffold Ga0007787_10004548

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10004548
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5203
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → unclassified Spirochaetales → Spirochaetales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006894	Metagenome / Metatranscriptome	362	Y
F014358	Metagenome	263	Y
F088545	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_1000454810	F014358	AGGGGG	MLDWKECIDCGDDVPASRYQAFCLFCERDREHSAEVERSSWCIVQEYTKGNYQFVTATQAPITLKQTNQKELRT*
Ga0007787_100045483	F088545	AGGAG	MKVRQIRRRAKSKYVTEAGFAFLRGCFSKRCRTYEAGCPTCDEWRFRDEHGRFVYNFEELRKYMDTTEGLTNVM*
Ga0007787_100045488	F006894	AGGAG	MTGFVWDYRIVNTKTANGGEDWYCLQEVVYAQDGKPESFGAPCLGSESMESFGDVWYMMQEAMKHPPLQEEDFVLQFEEISREG*