Scaffold Ga0007787_10000003

Overview

Basic Information

• Taxon OID: 3300004240
• Scaffold ID: Ga0007787_10000003
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68793
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (79.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026252	Metagenome / Metatranscriptome	198	Y
F043934	Metagenome	155	N
F091944	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007787_1000000328	F026252	AGGAG	MKKLSVLMTGFTALQINTEKRTIQKIDVPAAIAQALRELGHEVDWRKVTPGEDLSSYDVAWVNLAPLNSLNGRQGAMGALYTLSSGLPCVGFFDDWQFNTVFNGAKALVRKPEMLYKHLLVGTEHRGDEGATYFSRADIEAALERVRAVSPDAAKKCYIERYYMMDNDETIKPWEKRLVQAAEDLLIERWSAGMVPVCPMYSFGDRSIVRKRMPKELGPIEALDPTSTIVPTLSPVVPLNQSLKKRAWVLGALMPHDTWLEKKNLTWPVEIVGSRKLIKKLGGQRFDTEKDVLEFYNQHWGILSPPYPHAGSGWWRSRFLYTAHVGSILVTDKGEGDPLGDAYKLKIADVEKMSDAQLIEAAQAQRDAFTPFVPQYSSFVEHCSRIINRALQEDKGLKRNADGTLA*
Ga0007787_1000000351	F043934	GGAGG	VGRLIDISTVDLRALNLKTLLDKVLEKVVEVYEEYNVPLPSRQFWTMGEPAIDCEQLVVSFIQVYLGRPGDEASEPQRCQMPRSAVLTISISREIPVVGVNGKAPTGEKIQEASEIAAVDAWMFMELINKLDQWKEEEGDFGLGVIATADSTGFDGGFQTTAMQLTIAVP*
Ga0007787_1000000354	F091944	AGGA	MAYTGVFEAPKIIPSMFGLLTVVRPDTSVDEDKWVRGFSQEWETTPQFITNYDDTDTTSEQISAPTVNYFDEIKPFFIEVDETRSTLGFSGIDRIARITRQLEGVTQKALEVELWDGAIRIGESHENKALVSSTVTTLNSGTALSPRRAIALLEHQIALVSPAGEQGVIHMTRDIAALLASDGSLFYHTVKSDHLQTVGGTPIIIGSGYSGNGPTEATGATASGTNKWMYATGTVKVLLGKPDVVNDNLAQGYDVSNNANNIRLKAIRPAAVYFDPSIHLAVRVDLTA*