Scaffold Ga0063455_100087714

Overview

Basic Information

• Taxon OID: 3300004153
• Scaffold ID: Ga0063455_100087714
• Source Dataset Name: Grasslands soil microbial communities from Hopland, California, USA (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1232
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From Mediterranean Grasslands, California

Source Dataset Sampling Location

• Location Name: USA: Hopland, California
• Coordinates
  • Lat. (^o): 38.99297339
  • Long. (^o): -123.0674491

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022168	Metagenome / Metatranscriptome	215	Y
F028766	Metagenome / Metatranscriptome	190	Y
F034586	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063455_1000877142	F022168	GGA	MFVEADLKREVAALGALLGDTRVRFRQGRTPYDSAQDLINVDLEIRDALSRPLSPELQLEVQRLTARLRAIDPR*
Ga0063455_1000877143	F028766	GAGG	MDPYMTKTQALLREGKVRLDALSASMRAPAPEFSVLARRRKAMHLEARFADVNRLFELLRSAGTEGIADLKVALEKSFDALRAEMGWKP*
Ga0063455_1000877144	F034586	N/A	VDARREQYRWWLLDGDLEIVSDGRVAGASLLAALASLNRQIDRLGDRGHHPNNRPYRLIVYKGASVVAVRPATVGIC*