Basic Information | |
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Taxon OID | 3300004152 Open in IMG/M |
Scaffold ID | Ga0062386_101205601 Open in IMG/M |
Source Dataset Name | Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 629 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Calvert Island, British Columbia, Canada | |||||||
Coordinates | Lat. (o) | 51.62 | Long. (o) | -128.09 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F017589 | Metagenome | 239 | Y |
F022573 | Metagenome / Metatranscriptome | 213 | N |
Protein ID | Family | RBS | Sequence |
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Ga0062386_1012056011 | F017589 | N/A | MPGNLIQSEPNGVMPASLCTAFTELREFSELQNQFHDGTIQRSQLAQTSRRNFRLRKRLNAAALAVLYNFWLSQNGGLTSFAFYNPFDITAGHQIGSNYD |
Ga0062386_1012056012 | F022573 | N/A | LVEQAGKLYQQATYQDGQARTYASTIPTLGGIASGTYPTPGGPTTAGGTGGPTYLSLNISGSDTANFMTGNYVTPQFVTDQSMAAQNSSYGRTQQSANMQVPGLTIA* |
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