Scaffold Ga0062386_100199400

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0062386_100199400

Scaffold Ga0062386_100199400

Overview

Basic Information
Taxon OID	3300004152 Open in IMG/M
Scaffold ID	Ga0062386_100199400 Open in IMG/M
Source Dataset Name	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1574
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location Name	Calvert Island, British Columbia, Canada
Coordinates	Lat. (^o)	51.62	Long. (^o)	-128.09	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027300	Metagenome / Metatranscriptome	195	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062386_1001994002	F027300	GGAGG	MRTASIYATAVVTAVMLAPWMGAYAQNSQLSVPNVTVTAPAAPVEPPYMRDPWKSTGRNPYFGRYRVEEDKFAAAPCSATRIAFGPNGKCLQGYRLGLPGMTTNTGANPCDMALDVVIDTAGKLAIEADILSFDPYKVTAQGSIPRWCNVKSYTGYDQEDFQDMNQVT

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