Scaffold Ga0062386_100172841

Overview

Basic Information

• Taxon OID: 3300004152
• Scaffold ID: Ga0062386_100172841
• Source Dataset Name: Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1692
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014894	Metagenome / Metatranscriptome	259	Y
F032938	Metagenome / Metatranscriptome	178	Y
F036810	Metagenome	169	Y
F045709	Metagenome / Metatranscriptome	152	Y
F070426	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062386_1001728411	F036810	N/A	TKELDMSLQSSQGTCVSTPAIWMARATAKCRAIQLSIERRSFERKLETIVRAANAHHSCGQSPGSAQFKLLRKCADDLCANFAQRWDISPELLEAQIPAITKLKSLADPPTKPEPLVLVTLGVAGAVALFFLMGVLASLASVGYHLIGGR*
Ga0062386_1001728412	F070426	GGAGG	MILELIVAAEASALSASRIRRSQMRRQEILLGGSTSEINLPFLDQYLRQQTANPTKLQTFAAQKLAAVCRQVVHTQAFELLVLKLIQSASCRYRRESEISKVKVIL*
Ga0062386_1001728413	F045709	AGG	MNLTPSQKGSFLAGVALWVLIWASVWKADDIAEAMRIQRWFNSTRCLRWIGQHKSTSLLGTELVNYGTHGLDPLGVSFSLGGTLVNVLFIYLFLPCLEKLLRQKGTASATLQ*
Ga0062386_1001728414	F014894	AGGAGG	MSLRKGSAIMRMSIGVPGFSIYFEHHQIKPFIKDHSKKAKDLFNERVVPAVLRGTCKALEVVANNTADAHDYLISKMKSKQAA*
Ga0062386_1001728415	F032938	AGGAG	MQKYLVVSYDDDQQQWFWDYVAAKTAEDAVAYVCERRPYVIAADAASLSQVQGIARDMKSRSIARIIHQFNS