Scaffold Ga0062386_100033618

Overview

Basic Information

• Taxon OID: 3300004152
• Scaffold ID: Ga0062386_100033618
• Source Dataset Name: Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3816
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001791	Metagenome / Metatranscriptome	633	Y
F026353	Metagenome / Metatranscriptome	198	Y
F030045	Metagenome / Metatranscriptome	186	Y
F055985	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062386_1000336181	F030045	GGA	MITAAEYRAWAEESLEWAYNATNESSRQACIRWAEIWLESALRVERLAALLEHPPKEPMPATDYEWVLPPFGEWRRKGTSL*
Ga0062386_1000336183	F001791	GAG	MPRYFFTIHGRAKIEDDRAGTYLPDVGAAFSYAEYTIRELRKKSGYNDPALIMIIKDEARQTVLSLPFFPGQ*
Ga0062386_1000336185	F055985	GGA	MREYDDYVTRVAVCEQGTKNARTESEKQSWLLMADSWRETAKLQETLEFIRKVPMQRASGA*
Ga0062386_1000336187	F026353	N/A	MSVLDDFVRIGLYRERASEFELLAETEASLDVRLRFRVIAHHYRELMDRELQADKARMAELMERARLQRQQAAPEASLPATSETQFFLIAAE*