Scaffold Ga0062386_100003953

Overview

Basic Information

• Taxon OID: 3300004152
• Scaffold ID: Ga0062386_100003953
• Source Dataset Name: Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10213
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033566	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062386_1000039531	F033566	GAGG	VAPANNREVAYPVETQLALIRRDIEEIHHALHGDGKGRKGLVDQVEELVMVADRGRFSLRVALWLGGGIVAAATALAQFKQAILGLFHQ*